KodDNA|Eminent Biosciences Products|EMBL to FASTA|Anuraj Nayarisseri|Indore|

EMBL FLAT File to FASTA Conversion

Format Conversion

EMBL2FASTA

EMBLFeatureExtrct

INPUT EMBL Feature format to convert FASTA Format

ID   AI872233; SV 1; linear; mRNA; EST; HUM; 727 BP.
XX
AC   AI872233;
XX
DT   22-JUL-1999 (Rel. 60, Created)
DT   27-JAN-2011 (Rel. 107, Last updated, Version 5)
XX
DE   wm56g07.x1 NCI_CGAP_Ut2 Homo sapiens cDNA clone IMAGE:2439996 3' similar to
DE   gb:M13452 LAMIN A (HUMAN), mRNA sequence.
XX
KW   EST.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-727
RA   NCI-CGAP;
RT   "National Cancer Institute, Cancer Genome Anatomy Project (CGAP), Tumor
RT   Gene Index http://www.ncbi.nlm.nih.gov/ncicgap";
RL   Unpublished.
XX
DR   UNILIB; 134; 1462.
XX
CC   Contact: Robert Strausberg, Ph.D.
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Christopher Moskaluk, M.D., Ph.D., Michael R.
CC   Emmert-Buck, M.D., Ph.D.
CC    cDNA Library Preparation: Life Technologies, Inc.
CC    cDNA Library Arrayed by: Greg Lennon, Ph.D.
CC    DNA Sequencing by: Washington University Genome Sequencing Center
CC    Clone distribution: NCI-CGAP clone distribution information can be
CC   found through the I.M.A.G.E. Consortium/LLNL at:
CC   www-bio.llnl.gov/bbrp/image/image.html
CC   Insert Length: 1967   Std Error: 0.00
CC   Seq primer: -40UP from Gibco
CC   High quality sequence stop: 402.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..727
FT                   /organism="Homo sapiens"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="LIBEST_001462 NCI_CGAP_Ut2"
FT                   /clone="IMAGE:2439996"
FT                   /tissue_type="moderately-differentiated endometrial
FT                   adenocarcinoma, 3 pooled tumors"
FT                   /note="Organ: uterus; Vector: pCMV-SPORT6; Site_1: SalI;
FT                   Site_2: NotI; Cloned unidirectionally. Primer: Oligo dT.
FT                   Average insert size 1.85 kb. Life Technologies catalog #:
FT                   11539-012"
FT                   /db_xref="taxon:9606"
FT                   /db_xref="UNILIB:134"
XX
SQ   Sequence 727 BP; 157 A; 215 C; 197 G; 157 T; 1 other;
     tttttttttt ttgccagggg taaaaacaac tagtgtattg atttggggag gagagaaggg        60
     gtgcagatgg gaaatgggga ggcaagggct ctttaacgtt tgccaaaacc actgccacac       120
     ccctccaccc cctcttgcct ttctcctcca cggtgggtgc cagcaggctc taccctttcc       180
     agtgacctcc ctttccctcc tcccagcacc ccacttggct tcaacctcca gtgactgcac       240
     agagcccacc cagggtctaa agctagggaa ggcagctcaa actcaccttt cttctccctt       300
     cttccacctc ccacctcatt cccatctctt gtctaaataa aatacagaaa agcaagcgca       360
     gctggtacct gggagaatgg actcaccccg gggctggggg catgggtggg gactgggggc       420
     ggggcatgca gaggaacctc anccaggtgt agtggaatca cagcaggcca agcccagggg       480
     cccggctcaa gctgtcctct ctctctctct ctccctctcg gaggctgggc tggcagtgag       540
     cctgccgttc agaggaaggc tggccgagaa gcctctatgg ctggctctca ggcaccatgt       600
     cacagggtcg ccgggtgggg ggcaacatca gggcagaaaa acacaaccta gcctgtataa       660
     aagcccccct atacctgggt tttagaggaa gcgctctctg ttgttaagca gatgggaagt       720
     tcctgga                                                                 727
//

Sequence Mapping

Sequence Analysis

ORF Finder	Protein GRAVY	Prot Iso Point	Prot Patrn srch	Restriction sites	DNA Mol Wt
DNA Stats	Fuzzy Nuc	Pairwise Prot	DNA Ptrn srch	Mutate Digest	Protein Mol Wt
Protein Stats	Fuzzy Pro	Pairwise DNA	Idntity & Simlari	Restrict Digest	PCR Primer St
Translate DNA	Reverse Trans	Rev. Complnt	CpG Islands	Multi Rev Trans	PCR Product